Yamaha has made this procedure about as easy as it can be by including a flushing attachment on the motor. For best results, this procedure should be done right after operating the motor, while it's still warm, but anytime is better than never. Ideally the motor should be flushed after every use in salt or brackish water, water that has mineral content, or when used in muddy/silty water.
NOTICE: Do not perform this procedure while the engine is running. The water pump may be damaged and severe damage from the overheating can result
Tip: If the boat remains in the water, tilt the outboard motor up until it is completely out of the water. This will allow the freshwater to flush out the water and exhaust passages in the midsection and lower unit that would otherwise remain below water lever.
If you really want to run the engine while flushing, you must use an outboard engine flush attachment on the lower unit. The engine should only run in neutral at an idle speed. For personal safety, the propeller should be removed to prevent contact if accidentaly shifted into gear. And never leave a motor unattended while it is running.